Chapter 8 Package Citations
library(grateful)
pkgs <- cite_packages(output = "table", out.dir = ".", cite.tidyverse = TRUE, dependencies = TRUE)
knitr::kable(pkgs)
Package | Version | Citation |
---|---|---|
abind | 1.4.5 | Plate and Heiberger (2016) |
arrayhelpers | 1.1.0 | Beleites (2020) |
backports | 1.5.0 | Michel Lang, Murdoch, and R Core Team (2024) |
base | 4.4.1 | R Core Team (2024) |
base64enc | 0.1.3 | Urbanek (2015) |
bayesplot | 1.11.1 | Gabry et al. (2019); Gabry and Mahr (2024) |
BH | 1.84.0.0 | Eddelbuettel, Emerson, and Kane (2024) |
bit | 4.5.0 | Oehlschlägel (2024a) |
bit64 | 4.5.2 | Oehlschlägel (2024b) |
bookdown | 0.41 | Xie (2016); Xie (2024a) |
bridgesampling | 1.1.2 | Gronau, Singmann, and Wagenmakers (2020) |
brms | 2.21.0 | Bürkner (2017); Bürkner (2018); Bürkner (2021) |
Brobdingnag | 1.2.9 | Hankin (2007) |
bslib | 0.7.0 | Sievert, Cheng, and Aden-Buie (2024) |
cachem | 1.1.0 | Chang (2024a) |
callr | 3.7.6 | Csárdi and Chang (2024a) |
causaldata | 0.1.4 | Huntington-Klein and Barrett (2024) |
checkmate | 2.3.1 | Michel Lang (2017) |
chk | 0.9.2 | Thorley, Müller, and Pearson (2024) |
clipr | 0.8.0 | Lincoln (2022) |
cobalt | 4.5.5 | Greifer (2024) |
coda | 0.19.4.1 | Plummer et al. (2006) |
colorspace | 2.1.0 | Zeileis, Hornik, and Murrell (2009); Stauffer et al. (2009); Zeileis et al. (2020) |
cpp11 | 0.4.7 | Vaughan, Hester, and François (2023) |
crayon | 1.5.3 | Csárdi (2024) |
data.table | 1.15.4 | Barrett et al. (2024) |
desc | 1.4.3 | Csárdi, Müller, and Hester (2023) |
digest | 0.6.35 | Antoine Lucas et al. (2024) |
distributional | 0.4.0 | O’Hara-Wild, Kay, and Hayes (2024) |
emmeans | 1.10.5 | R. V. Lenth (2024) |
estimability | 1.5.1 | R. Lenth (2024) |
evaluate | 0.24.0 | H. Wickham and Xie (2024) |
fansi | 1.0.6 | Gaslam (2023) |
farver | 2.1.2 | Pedersen, Nicolae, and François (2024) |
fastmap | 1.2.0 | Chang (2024b) |
fontawesome | 0.5.2 | Iannone (2023) |
foreach | 1.5.2 | Microsoft and Weston (2022) |
fs | 1.6.4 | Hester, Wickham, and Csárdi (2024) |
future | 1.33.2 | Bengtsson (2021) |
future.apply | 1.11.2 | Bengtsson (2021) |
generics | 0.1.3 | H. Wickham, Kuhn, and Vaughan (2022) |
ggdist | 3.3.2 | Kay (2024b); Kay (2024a) |
ggridges | 0.5.6 | Wilke (2024) |
glmnet | 4.1.8 | Friedman, Tibshirani, and Hastie (2010); Simon et al. (2011); Tay, Narasimhan, and Hastie (2023) |
globals | 0.16.3 | Bengtsson (2024a) |
glue | 1.7.0 | Hester and Bryan (2024) |
gridExtra | 2.3 | Auguie (2017) |
gtable | 0.3.5 | H. Wickham and Pedersen (2024) |
highr | 0.11 | Xie and Qiu (2024) |
htmltools | 0.5.8.1 | Cheng, Sievert, et al. (2024) |
inline | 0.3.19 | Sklyar et al. (2021) |
insight | 0.20.5 | Lüdecke, Waggoner, and Makowski (2019) |
isoband | 0.2.7 | H. Wickham, Wilke, and Pedersen (2022) |
iterators | 1.0.14 | Analytics and Weston (2022) |
jomo | 2.7.6 | Quartagno and Carpenter (2023) |
jquerylib | 0.1.4 | Sievert and Cheng (2021) |
knitr | 1.47 | Xie (2014); Xie (2015); Xie (2024b) |
labeling | 0.4.3 | Justin Talbot (2023) |
lifecycle | 1.0.4 | Henry and Wickham (2023) |
listenv | 0.9.1 | Bengtsson (2024b) |
lme4 | 1.1.35.4 | Bates et al. (2015) |
loo | 2.7.0.9000 | Vehtari, Gelman, and Gabry (2017); Yao et al. (2017); Vehtari et al. (2024) |
marginaleffects | 0.23.0 | Arel-Bundock, Greifer, and Heiss (Forthcoming) |
matrixStats | 1.3.0 | Bengtsson (2024c) |
memoise | 2.0.1 | H. Wickham et al. (2021) |
mice | 3.16.0 | van Buuren and Groothuis-Oudshoorn (2011) |
mime | 0.12 | Xie (2021) |
minqa | 1.2.7 | Bates et al. (2024) |
mitml | 0.4.5 | Grund, Robitzsch, and Luedtke (2023) |
munsell | 0.5.1 | C. Wickham (2024) |
mvtnorm | 1.2.5 | Genz and Bretz (2009) |
nleqslv | 3.3.5 | Hasselman (2023) |
nloptr | 2.1.1 | S. G. Johnson (2008) |
numDeriv | 2016.8.1.1 | Gilbert and Varadhan (2019) |
ordinal | 2023.12.4.1 | Christensen (2023) |
pan | 1.9 | Zhao and Schafer (2023) |
parallelly | 1.37.1 | Bengtsson (2024d) |
patchwork | 1.3.0 | Pedersen (2024) |
pkgbuild | 1.4.4 | H. Wickham, Hester, and Csárdi (2024) |
pkgconfig | 2.0.3 | Csárdi (2019) |
plyr | 1.8.9 | H. Wickham (2011) |
posterior | 1.5.0.9000 | Vehtari et al. (2021); Bürkner et al. (2023) |
prettyunits | 1.2.0 | Csardi (2023) |
processx | 3.8.4 | Csárdi and Chang (2024b) |
progress | 1.2.3 | Csárdi and FitzJohn (2023) |
ps | 1.7.6 | Loden et al. (2024) |
quadprog | 1.5.8 | Berwin A. Turlach R port by Andreas Weingessel <Andreas.Weingessel@ci.tuwien.ac.at> Fortran contributions from Cleve Moler dpodi/LINPACK) (2019) |
QuickJSR | 1.2.2 | A. R. Johnson (2024) |
R6 | 2.5.1 | Chang (2021) |
rappdirs | 0.3.3 | Ratnakumar, Mick, and Davis (2021) |
RColorBrewer | 1.1.3 | Neuwirth (2022) |
Rcpp | 1.0.12 | Eddelbuettel and François (2011); Eddelbuettel (2013); Eddelbuettel and Balamuta (2018); Eddelbuettel et al. (2024) |
RcppEigen | 0.3.4.0.0 | Bates and Eddelbuettel (2013) |
RcppParallel | 5.1.7 | Allaire et al. (2023) |
remotes | 2.5.0 | Csárdi et al. (2024) |
renv | 1.0.11 | Ushey and Wickham (2024) |
reshape2 | 1.4.4 | H. Wickham (2007) |
rmarkdown | 2.27 | Xie, Allaire, and Grolemund (2018); Xie, Dervieux, and Riederer (2020); Allaire et al. (2024) |
rstan | 2.35.0.9000 | Stan Development Team (n.d.) |
rstantools | 2.4.0 | Gabry et al. (2024) |
sandwich | 3.1.1 | Zeileis (2004); Zeileis (2006); Zeileis, Köll, and Graham (2020) |
sass | 0.4.9 | Cheng, Mastny, et al. (2024) |
scales | 1.3.0 | H. Wickham, Pedersen, and Seidel (2023) |
shape | 1.4.6.1 | Soetaert (2024) |
StanHeaders | 2.35.0.9000 | Stan Development Team (2020) |
stringi | 1.8.4 | Gagolewski (2022) |
svUnit | 1.0.6 | Grosjean (2024) |
tensorA | 0.36.2.1 | van den Boogaart (2023) |
tidybayes | 3.0.6 | Kay (2023) |
tidyselect | 1.2.1 | Henry and Wickham (2024) |
tidyverse | 2.0.0 | H. Wickham et al. (2019) |
tinytex | 0.51 | Xie (2019); Xie (2024c) |
tzdb | 0.4.0 | Vaughan (2023) |
ucminf | 1.2.2 | Nielsen and Mortensen (2024) |
utf8 | 1.2.4 | Perry (2023) |
vctrs | 0.6.5 | H. Wickham, Henry, and Vaughan (2023) |
viridisLite | 0.4.2 | Garnier et al. (2023) |
vroom | 1.6.5 | Hester, Wickham, and Bryan (2023) |
withr | 3.0.0 | Hester et al. (2024) |
xfun | 0.48 | Xie (2024d) |
xtable | 1.8.4 | Dahl et al. (2019) |
yaml | 2.3.8 | Garbett et al. (2023) |
zoo | 1.8.12 | Zeileis and Grothendieck (2005) |
Allaire, JJ, Romain Francois, Kevin Ushey, Gregory Vandenbrouck, Marcus Geelnard, and Intel. 2023. RcppParallel: Parallel Programming Tools for “Rcpp”. https://CRAN.R-project.org/package=RcppParallel.
Allaire, JJ, Yihui Xie, Christophe Dervieux, Jonathan McPherson, Javier Luraschi, Kevin Ushey, Aron Atkins, et al. 2024. rmarkdown: Dynamic Documents for r. https://github.com/rstudio/rmarkdown.
Analytics, Revolution, and Steve Weston. 2022. iterators: Provides Iterator Construct. https://CRAN.R-project.org/package=iterators.
Antoine Lucas, Dirk Eddelbuettel with contributions by, Jarek Tuszynski, Henrik Bengtsson, Simon Urbanek, Mario Frasca, Bryan Lewis, Murray Stokely, et al. 2024. digest: Create Compact Hash Digests of r Objects. https://CRAN.R-project.org/package=digest.
Arel-Bundock, Vincent, Noah Greifer, and Andrew Heiss. Forthcoming. “How to Interpret Statistical Models Using
marginaleffects
in R
and Python
.” Journal of Statistical Software, Forthcoming. https://marginaleffects.com.
Auguie, Baptiste. 2017. gridExtra: Miscellaneous Functions for “Grid” Graphics. https://CRAN.R-project.org/package=gridExtra.
Barrett, Tyson, Matt Dowle, Arun Srinivasan, Jan Gorecki, Michael Chirico, and Toby Hocking. 2024. data.table: Extension of “data.frame”. https://CRAN.R-project.org/package=data.table.
Bates, Douglas, and Dirk Eddelbuettel. 2013. “Fast and Elegant Numerical Linear Algebra Using the RcppEigen Package.” Journal of Statistical Software 52 (5): 1–24. https://doi.org/10.18637/jss.v052.i05.
Bates, Douglas, Martin Mächler, Ben Bolker, and Steve Walker. 2015. “Fitting Linear Mixed-Effects Models Using lme4.” Journal of Statistical Software 67 (1): 1–48. https://doi.org/10.18637/jss.v067.i01.
Bates, Douglas, Katharine M. Mullen, John C. Nash, and Ravi Varadhan. 2024. minqa: Derivative-Free Optimization Algorithms by Quadratic Approximation. https://CRAN.R-project.org/package=minqa.
Beleites, C. 2020. arrayhelpers: Convenience Functions for Arrays. https://CRAN.R-project.org/package=arrayhelpers.
Bengtsson, Henrik. 2021. “A Unifying Framework for Parallel and Distributed Processing in r Using Futures.” The R Journal 13 (2): 208–27. https://doi.org/10.32614/RJ-2021-048.
———. 2024a. globals: Identify Global Objects in r Expressions. https://CRAN.R-project.org/package=globals.
———. 2024b. listenv: Environments Behaving (Almost) as Lists. https://CRAN.R-project.org/package=listenv.
———. 2024c. matrixStats: Functions That Apply to Rows and Columns of Matrices (and to Vectors). https://CRAN.R-project.org/package=matrixStats.
———. 2024d. parallelly: Enhancing the “parallel” Package. https://CRAN.R-project.org/package=parallelly.
Berwin A. Turlach R port by Andreas Weingessel <Andreas.Weingessel@ci.tuwien.ac.at> Fortran contributions from Cleve Moler dpodi/LINPACK), S original by. 2019. quadprog: Functions to Solve Quadratic Programming Problems. https://CRAN.R-project.org/package=quadprog.
Bürkner, Paul-Christian. 2017. “brms: An R Package for Bayesian Multilevel Models Using Stan.” Journal of Statistical Software 80 (1): 1–28. https://doi.org/10.18637/jss.v080.i01.
———. 2018. “Advanced Bayesian Multilevel Modeling with the R Package brms.” The R Journal 10 (1): 395–411. https://doi.org/10.32614/RJ-2018-017.
———. 2021. “Bayesian Item Response Modeling in R with brms and Stan.” Journal of Statistical Software 100 (5): 1–54. https://doi.org/10.18637/jss.v100.i05.
Bürkner, Paul-Christian, Jonah Gabry, Matthew Kay, and Aki Vehtari. 2023. “posterior: Tools for Working with Posterior Distributions.” https://mc-stan.org/posterior/.
Chang, Winston. 2021. R6: Encapsulated Classes with Reference Semantics. https://CRAN.R-project.org/package=R6.
———. 2024a. cachem: Cache r Objects with Automatic Pruning. https://CRAN.R-project.org/package=cachem.
———. 2024b. fastmap: Fast Data Structures. https://CRAN.R-project.org/package=fastmap.
Cheng, Joe, Timothy Mastny, Richard Iannone, Barret Schloerke, and Carson Sievert. 2024. sass: Syntactically Awesome Style Sheets (“Sass”). https://CRAN.R-project.org/package=sass.
Cheng, Joe, Carson Sievert, Barret Schloerke, Winston Chang, Yihui Xie, and Jeff Allen. 2024. htmltools: Tools for HTML. https://CRAN.R-project.org/package=htmltools.
Christensen, Rune H. B. 2023. Ordinal—Regression Models for Ordinal Data. https://CRAN.R-project.org/package=ordinal.
Cohen, Jessica, Pascaline Dupas, and Simone Schaner. 2015. “Price Subsidies, Diagnostic Tests, and Targeting of Malaria Treatment: Evidence from a Randomized Controlled Trial.” American Economic Review 105 (2): 609–45.
Csardi, Gabor. 2023. prettyunits: Pretty, Human Readable Formatting of Quantities. https://CRAN.R-project.org/package=prettyunits.
Csárdi, Gábor. 2019. pkgconfig: Private Configuration for “R” Packages. https://CRAN.R-project.org/package=pkgconfig.
———. 2024. crayon: Colored Terminal Output. https://CRAN.R-project.org/package=crayon.
Csárdi, Gábor, and Winston Chang. 2024a. callr: Call r from r. https://CRAN.R-project.org/package=callr.
———. 2024b. processx: Execute and Control System Processes. https://CRAN.R-project.org/package=processx.
Csárdi, Gábor, and Rich FitzJohn. 2023. progress: Terminal Progress Bars. https://CRAN.R-project.org/package=progress.
Csárdi, Gábor, Jim Hester, Hadley Wickham, Winston Chang, Martin Morgan, and Dan Tenenbaum. 2024. remotes: R Package Installation from Remote Repositories, Including “GitHub”. https://CRAN.R-project.org/package=remotes.
Csárdi, Gábor, Kirill Müller, and Jim Hester. 2023. desc: Manipulate DESCRIPTION Files. https://CRAN.R-project.org/package=desc.
Dahl, David B., David Scott, Charles Roosen, Arni Magnusson, and Jonathan Swinton. 2019. xtable: Export Tables to LaTeX or HTML. https://CRAN.R-project.org/package=xtable.
Eddelbuettel, Dirk. 2013. Seamless R and C++ Integration with Rcpp. New York: Springer. https://doi.org/10.1007/978-1-4614-6868-4.
Eddelbuettel, Dirk, and James Joseph Balamuta. 2018. “Extending R with C++: A Brief Introduction to Rcpp.” The American Statistician 72 (1): 28–36. https://doi.org/10.1080/00031305.2017.1375990.
Eddelbuettel, Dirk, John W. Emerson, and Michael J. Kane. 2024. BH: Boost c++ Header Files. https://CRAN.R-project.org/package=BH.
Eddelbuettel, Dirk, Romain Francois, JJ Allaire, Kevin Ushey, Qiang Kou, Nathan Russell, Inaki Ucar, Douglas Bates, and John Chambers. 2024. Rcpp: Seamless r and c++ Integration. https://CRAN.R-project.org/package=Rcpp.
Eddelbuettel, Dirk, and Romain François. 2011. “Rcpp: Seamless R and C++ Integration.” Journal of Statistical Software 40 (8): 1–18. https://doi.org/10.18637/jss.v040.i08.
Friedman, Jerome, Robert Tibshirani, and Trevor Hastie. 2010. “Regularization Paths for Generalized Linear Models via Coordinate Descent.” Journal of Statistical Software 33 (1): 1–22. https://doi.org/10.18637/jss.v033.i01.
Gabry, Jonah, Ben Goodrich, Martin Lysy, and Andrew Johnson. 2024. rstantools: Tools for Developing r Packages Interfacing with “Stan”. https://CRAN.R-project.org/package=rstantools.
Gabry, Jonah, and Tristan Mahr. 2024. “bayesplot: Plotting for Bayesian Models.” https://mc-stan.org/bayesplot/.
Gabry, Jonah, Daniel Simpson, Aki Vehtari, Michael Betancourt, and Andrew Gelman. 2019. “Visualization in Bayesian Workflow.” J. R. Stat. Soc. A 182: 389–402. https://doi.org/10.1111/rssa.12378.
Gagolewski, Marek. 2022. “stringi: Fast and Portable Character String Processing in R.” Journal of Statistical Software 103 (2): 1–59. https://doi.org/10.18637/jss.v103.i02.
Garbett, Shawn P, Jeremy Stephens, Kirill Simonov, Yihui Xie, Zhuoer Dong, Hadley Wickham, Jeffrey Horner, et al. 2023. yaml: Methods to Convert r Data to YAML and Back. https://CRAN.R-project.org/package=yaml.
Garnier, Simon, Ross, Noam, Rudis, Robert, Camargo, et al. 2023. viridis(Lite) - Colorblind-Friendly Color Maps for r. https://doi.org/10.5281/zenodo.4678327.
Gaslam, Brodie. 2023. fansi: ANSI Control Sequence Aware String Functions. https://CRAN.R-project.org/package=fansi.
Genz, Alan, and Frank Bretz. 2009. Computation of Multivariate Normal and t Probabilities. Lecture Notes in Statistics. Heidelberg: Springer-Verlag.
Gilbert, Paul, and Ravi Varadhan. 2019. numDeriv: Accurate Numerical Derivatives. https://CRAN.R-project.org/package=numDeriv.
Greifer, Noah. 2024. cobalt: Covariate Balance Tables and Plots. https://CRAN.R-project.org/package=cobalt.
Gronau, Quentin F., Henrik Singmann, and Eric-Jan Wagenmakers. 2020. “bridgesampling: An R Package for Estimating Normalizing Constants.” Journal of Statistical Software 92 (10): 1–29. https://doi.org/10.18637/jss.v092.i10.
Grosjean, Philippe. 2024. SciViews-r. MONS, Belgium: UMONS. https://www.sciviews.org/SciViews-R/.
Grund, Simon, Alexander Robitzsch, and Oliver Luedtke. 2023. mitml: Tools for Multiple Imputation in Multilevel Modeling. https://CRAN.R-project.org/package=mitml.
Hankin, R. K. S. 2007. “Very Large Numbers in r: Introducing Package Brobdingnag.” R News 7.
Hasselman, Berend. 2023. nleqslv: Solve Systems of Nonlinear Equations. https://CRAN.R-project.org/package=nleqslv.
Henry, Lionel, and Hadley Wickham. 2023. lifecycle: Manage the Life Cycle of Your Package Functions. https://CRAN.R-project.org/package=lifecycle.
———. 2024. tidyselect: Select from a Set of Strings. https://CRAN.R-project.org/package=tidyselect.
Hester, Jim, and Jennifer Bryan. 2024. glue: Interpreted String Literals. https://CRAN.R-project.org/package=glue.
Hester, Jim, Lionel Henry, Kirill Müller, Kevin Ushey, Hadley Wickham, and Winston Chang. 2024. withr: Run Code “With” Temporarily Modified Global State. https://CRAN.R-project.org/package=withr.
Hester, Jim, Hadley Wickham, and Jennifer Bryan. 2023. vroom: Read and Write Rectangular Text Data Quickly. https://CRAN.R-project.org/package=vroom.
Hester, Jim, Hadley Wickham, and Gábor Csárdi. 2024. fs: Cross-Platform File System Operations Based on “libuv”. https://CRAN.R-project.org/package=fs.
Huntington-Klein, Nick, and Malcolm Barrett. 2024. causaldata: Example Data Sets for Causal Inference Textbooks. https://CRAN.R-project.org/package=causaldata.
Iannone, Richard. 2023. fontawesome: Easily Work with “Font Awesome” Icons. https://CRAN.R-project.org/package=fontawesome.
Johnson, Andrew R. 2024. QuickJSR: Interface for the “QuickJS” Lightweight “JavaScript” Engine. https://CRAN.R-project.org/package=QuickJSR.
Johnson, Steven G. 2008. The NLopt Nonlinear-Optimization Package. https://github.com/stevengj/nlopt.
Justin Talbot. 2023. labeling: Axis Labeling. https://CRAN.R-project.org/package=labeling.
Kay, Matthew. 2023. tidybayes: Tidy Data and Geoms for Bayesian Models. https://doi.org/10.5281/zenodo.1308151.
———. 2024a. ggdist: Visualizations of Distributions and Uncertainty. https://doi.org/10.5281/zenodo.3879620.
———. 2024b. “ggdist: Visualizations of Distributions and Uncertainty in the Grammar of Graphics.” IEEE Transactions on Visualization and Computer Graphics 30 (1): 414–24. https://doi.org/10.1109/TVCG.2023.3327195.
Kurz, A. Solomon. 2023. Statistical Rethinking with Brms, Ggplot2, and the Tidyverse: Second Edition. Version 0.4.0. https://bookdown.org/content/4857/.
Lang, Martin, Benjamin G Purzycki, Coren L Apicella, Quentin D Atkinson, Alexander Bolyanatz, Emma Cohen, Carla Handley, et al. 2019. “Moralizing Gods, Impartiality and Religious Parochialism Across 15 Societies.” Proceedings of the Royal Society B 286 (1898): 20190202.
Lang, Michel. 2017. “checkmate: Fast Argument Checks for Defensive R Programming.” The R Journal 9 (1): 437–45. https://doi.org/10.32614/RJ-2017-028.
Lang, Michel, Duncan Murdoch, and R Core Team. 2024. backports: Reimplementations of Functions Introduced Since r-3.0.0. https://CRAN.R-project.org/package=backports.
Lenth, Russell. 2024. estimability: Tools for Assessing Estimability of Linear Predictions. https://CRAN.R-project.org/package=estimability.
Lenth, Russell V. 2024. emmeans: Estimated Marginal Means, Aka Least-Squares Means. https://CRAN.R-project.org/package=emmeans.
Lincoln, Matthew. 2022. clipr: Read and Write from the System Clipboard. https://CRAN.R-project.org/package=clipr.
Loden, Jay, Dave Daeschler, Giampaolo Rodola’, and Gábor Csárdi. 2024. ps: List, Query, Manipulate System Processes. https://CRAN.R-project.org/package=ps.
Lüdecke, Daniel, Philip Waggoner, and Dominique Makowski. 2019. “insight: A Unified Interface to Access Information from Model Objects in R.” Journal of Open Source Software 4 (38): 1412. https://doi.org/10.21105/joss.01412.
McElreath, Richard. 2020. Statistical Rethinking: A Bayesian Course with Examples in R and Stan. Second. CRC Press.
Microsoft, and Steve Weston. 2022. foreach: Provides Foreach Looping Construct. https://CRAN.R-project.org/package=foreach.
Miles, Andrew. 2016. “Obtaining Predictions from Models Fit to Multiply Imputed Data.” Sociological Methods & Research 45 (1): 175–85. https://doi.org/10.1177/0049124115610345.
Neuwirth, Erich. 2022. RColorBrewer: ColorBrewer Palettes. https://CRAN.R-project.org/package=RColorBrewer.
Nielsen, Hans Bruun, and Stig Bousgaard Mortensen. 2024. ucminf: General-Purpose Unconstrained Non-Linear Optimization. https://CRAN.R-project.org/package=ucminf.
O’Hara-Wild, Mitchell, Matthew Kay, and Alex Hayes. 2024. distributional: Vectorised Probability Distributions. https://CRAN.R-project.org/package=distributional.
Oehlschlägel, Jens. 2024a. bit: Classes and Methods for Fast Memory-Efficient Boolean Selections. https://CRAN.R-project.org/package=bit.
———. 2024b. Bit64: A S3 Class for Vectors of 64bit Integers. https://CRAN.R-project.org/package=bit64.
Pedersen, Thomas Lin. 2024. patchwork: The Composer of Plots. https://CRAN.R-project.org/package=patchwork.
Pedersen, Thomas Lin, Berendea Nicolae, and Romain François. 2024. farver: High Performance Colour Space Manipulation. https://CRAN.R-project.org/package=farver.
Perry, Patrick O. 2023. Utf8: Unicode Text Processing. https://CRAN.R-project.org/package=utf8.
Plate, Tony, and Richard Heiberger. 2016. abind: Combine Multidimensional Arrays. https://CRAN.R-project.org/package=abind.
Plummer, Martyn, Nicky Best, Kate Cowles, and Karen Vines. 2006. “CODA: Convergence Diagnosis and Output Analysis for MCMC.” R News 6 (1): 7–11. https://journal.r-project.org/archive/.
Quartagno, Matteo, and James Carpenter. 2023. jomo: A Package for Multilevel Joint Modelling Multiple Imputation. https://CRAN.R-project.org/package=jomo.
R Core Team. 2024. R: A Language and Environment for Statistical Computing. Vienna, Austria: R Foundation for Statistical Computing. https://www.R-project.org/.
Ratnakumar, Sridhar, Trent Mick, and Trevor Davis. 2021. rappdirs: Application Directories: Determine Where to Save Data, Caches, and Logs. https://CRAN.R-project.org/package=rappdirs.
Sievert, Carson, and Joe Cheng. 2021. jquerylib: Obtain “jQuery” as an HTML Dependency Object. https://CRAN.R-project.org/package=jquerylib.
Sievert, Carson, Joe Cheng, and Garrick Aden-Buie. 2024. bslib: Custom “Bootstrap” “Sass” Themes for “shiny” and “rmarkdown”. https://CRAN.R-project.org/package=bslib.
Simon, Noah, Jerome Friedman, Robert Tibshirani, and Trevor Hastie. 2011. “Regularization Paths for Cox’s Proportional Hazards Model via Coordinate Descent.” Journal of Statistical Software 39 (5): 1–13. https://doi.org/10.18637/jss.v039.i05.
Sklyar, Oleg, Duncan Murdoch, Mike Smith, Dirk Eddelbuettel, Romain Francois, Karline Soetaert, and Johannes Ranke. 2021. inline: Functions to Inline c, c++, Fortran Function Calls from r. https://CRAN.R-project.org/package=inline.
Soetaert, Karline. 2024. shape: Functions for Plotting Graphical Shapes, Colors. https://CRAN.R-project.org/package=shape.
Stan Development Team. 2020. “StanHeaders: Headers for the R Interface to Stan.” https://mc-stan.org/.
———. n.d. “RStan: The R Interface to Stan.” https://mc-stan.org/.
Stauffer, Reto, Georg J. Mayr, Markus Dabernig, and Achim Zeileis. 2009. “Somewhere over the Rainbow: How to Make Effective Use of Colors in Meteorological Visualizations.” Bulletin of the American Meteorological Society 96 (2): 203–16. https://doi.org/10.1175/BAMS-D-13-00155.1.
Tay, J. Kenneth, Balasubramanian Narasimhan, and Trevor Hastie. 2023. “Elastic Net Regularization Paths for All Generalized Linear Models.” Journal of Statistical Software 106 (1): 1–31. https://doi.org/10.18637/jss.v106.i01.
Thorley, Joe, Kirill Müller, and Ayla Pearson. 2024. chk: Check User-Supplied Function Arguments. https://CRAN.R-project.org/package=chk.
Urbanek, Simon. 2015. Base64enc: Tools for Base64 Encoding. https://CRAN.R-project.org/package=base64enc.
Ushey, Kevin, and Hadley Wickham. 2024. renv: Project Environments. https://CRAN.R-project.org/package=renv.
van Buuren, Stef, and Karin Groothuis-Oudshoorn. 2011. “mice: Multivariate Imputation by Chained Equations in r.” Journal of Statistical Software 45 (3): 1–67. https://doi.org/10.18637/jss.v045.i03.
van den Boogaart, K. Gerald. 2023. tensorA: Advanced Tensor Arithmetic with Named Indices. https://CRAN.R-project.org/package=tensorA.
VanderWeele, Tyler J, John W Jackson, and Shanshan Li. 2016. “Causal Inference and Longitudinal Data: A Case Study of Religion and Mental Health.” Social Psychiatry and Psychiatric Epidemiology 51: 1457–66.
Vaughan, Davis. 2023. tzdb: Time Zone Database Information. https://CRAN.R-project.org/package=tzdb.
Vaughan, Davis, Jim Hester, and Romain François. 2023. Cpp11: A c++11 Interface for r’s c Interface. https://CRAN.R-project.org/package=cpp11.
Vehtari, Aki, Jonah Gabry, Måns Magnusson, Yuling Yao, Paul-Christian Bürkner, Topi Paananen, and Andrew Gelman. 2024. “loo: Efficient Leave-One-Out Cross-Validation and WAIC for Bayesian Models.” https://mc-stan.org/loo/.
Vehtari, Aki, Andrew Gelman, and Jonah Gabry. 2017. “Practical Bayesian Model Evaluation Using Leave-One-Out Cross-Validation and WAIC.” Statistics and Computing 27: 1413–32. https://doi.org/10.1007/s11222-016-9696-4.
Vehtari, Aki, Andrew Gelman, Daniel Simpson, Bob Carpenter, and Paul-Christian Bürkner. 2021. “Rank-Normalization, Folding, and Localization: An Improved Rhat for Assessing Convergence of MCMC (with Discussion).” Bayesian Analysis.
Wickham, Charlotte. 2024. munsell: Utilities for Using Munsell Colours. https://CRAN.R-project.org/package=munsell.
Wickham, Hadley. 2007. “Reshaping Data with the reshape Package.” Journal of Statistical Software 21 (12): 1–20. http://www.jstatsoft.org/v21/i12/.
———. 2011. “The Split-Apply-Combine Strategy for Data Analysis.” Journal of Statistical Software 40 (1): 1–29. https://www.jstatsoft.org/v40/i01/.
Wickham, Hadley, Mara Averick, Jennifer Bryan, Winston Chang, Lucy D’Agostino McGowan, Romain François, Garrett Grolemund, et al. 2019. “Welcome to the tidyverse.” Journal of Open Source Software 4 (43): 1686. https://doi.org/10.21105/joss.01686.
Wickham, Hadley, Lionel Henry, and Davis Vaughan. 2023. vctrs: Vector Helpers. https://CRAN.R-project.org/package=vctrs.
Wickham, Hadley, Jim Hester, Winston Chang, Kirill Müller, and Daniel Cook. 2021. memoise: “Memoisation” of Functions. https://CRAN.R-project.org/package=memoise.
Wickham, Hadley, Jim Hester, and Gábor Csárdi. 2024. pkgbuild: Find Tools Needed to Build r Packages. https://CRAN.R-project.org/package=pkgbuild.
Wickham, Hadley, Max Kuhn, and Davis Vaughan. 2022. generics: Common S3 Generics Not Provided by Base r Methods Related to Model Fitting. https://CRAN.R-project.org/package=generics.
Wickham, Hadley, and Thomas Lin Pedersen. 2024. gtable: Arrange “Grobs” in Tables. https://CRAN.R-project.org/package=gtable.
Wickham, Hadley, Thomas Lin Pedersen, and Dana Seidel. 2023. scales: Scale Functions for Visualization. https://CRAN.R-project.org/package=scales.
Wickham, Hadley, Claus O. Wilke, and Thomas Lin Pedersen. 2022. isoband: Generate Isolines and Isobands from Regularly Spaced Elevation Grids. https://CRAN.R-project.org/package=isoband.
Wickham, Hadley, and Yihui Xie. 2024. evaluate: Parsing and Evaluation Tools That Provide More Details Than the Default. https://CRAN.R-project.org/package=evaluate.
Wilke, Claus O. 2024. ggridges: Ridgeline Plots in “ggplot2”. https://CRAN.R-project.org/package=ggridges.
Xie, Yihui. 2014. “knitr: A Comprehensive Tool for Reproducible Research in R.” In Implementing Reproducible Computational Research, edited by Victoria Stodden, Friedrich Leisch, and Roger D. Peng. Chapman; Hall/CRC.
———. 2015. Dynamic Documents with R and Knitr. 2nd ed. Boca Raton, Florida: Chapman; Hall/CRC. https://yihui.org/knitr/.
———. 2016. bookdown: Authoring Books and Technical Documents with R Markdown. Boca Raton, Florida: Chapman; Hall/CRC. https://bookdown.org/yihui/bookdown.
———. 2019. “TinyTeX: A Lightweight, Cross-Platform, and Easy-to-Maintain LaTeX Distribution Based on TeX Live.” TUGboat 40 (1): 30–32. https://tug.org/TUGboat/Contents/contents40-1.html.
———. 2021. mime: Map Filenames to MIME Types. https://CRAN.R-project.org/package=mime.
———. 2024a. bookdown: Authoring Books and Technical Documents with r Markdown. https://github.com/rstudio/bookdown.
———. 2024b. knitr: A General-Purpose Package for Dynamic Report Generation in r. https://yihui.org/knitr/.
———. 2024c. tinytex: Helper Functions to Install and Maintain TeX Live, and Compile LaTeX Documents. https://github.com/rstudio/tinytex.
———. 2024d. xfun: Supporting Functions for Packages Maintained by “Yihui Xie”. https://CRAN.R-project.org/package=xfun.
Xie, Yihui, J. J. Allaire, and Garrett Grolemund. 2018. R Markdown: The Definitive Guide. Boca Raton, Florida: Chapman; Hall/CRC. https://bookdown.org/yihui/rmarkdown.
Xie, Yihui, Christophe Dervieux, and Emily Riederer. 2020. R Markdown Cookbook. Boca Raton, Florida: Chapman; Hall/CRC. https://bookdown.org/yihui/rmarkdown-cookbook.
Xie, Yihui, and Yixuan Qiu. 2024. highr: Syntax Highlighting for r Source Code. https://CRAN.R-project.org/package=highr.
Yao, Yuling, Aki Vehtari, Daniel Simpson, and Andrew Gelman. 2017. “Using Stacking to Average Bayesian Predictive Distributions.” Bayesian Analysis. https://doi.org/10.1214/17-BA1091.
Zeileis, Achim. 2004. “Econometric Computing with HC and HAC Covariance Matrix Estimators.” Journal of Statistical Software 11 (10): 1–17. https://doi.org/10.18637/jss.v011.i10.
———. 2006. “Object-Oriented Computation of Sandwich Estimators.” Journal of Statistical Software 16 (9): 1–16. https://doi.org/10.18637/jss.v016.i09.
Zeileis, Achim, Jason C. Fisher, Kurt Hornik, Ross Ihaka, Claire D. McWhite, Paul Murrell, Reto Stauffer, and Claus O. Wilke. 2020. “colorspace: A Toolbox for Manipulating and Assessing Colors and Palettes.” Journal of Statistical Software 96 (1): 1–49. https://doi.org/10.18637/jss.v096.i01.
Zeileis, Achim, and Gabor Grothendieck. 2005. “zoo: S3 Infrastructure for Regular and Irregular Time Series.” Journal of Statistical Software 14 (6): 1–27. https://doi.org/10.18637/jss.v014.i06.
Zeileis, Achim, Kurt Hornik, and Paul Murrell. 2009. “Escaping RGBland: Selecting Colors for Statistical Graphics.” Computational Statistics & Data Analysis 53 (9): 3259–70. https://doi.org/10.1016/j.csda.2008.11.033.
Zeileis, Achim, Susanne Köll, and Nathaniel Graham. 2020. “Various Versatile Variances: An Object-Oriented Implementation of Clustered Covariances in R.” Journal of Statistical Software 95 (1): 1–36. https://doi.org/10.18637/jss.v095.i01.
Zhao, Jing Hua, and Joseph L. Schafer. 2023. pan: Multiple Imputation for Multivariate Panel or Clustered Data.
References
Allaire, JJ, Romain Francois, Kevin Ushey, Gregory Vandenbrouck, Marcus Geelnard, and Intel. 2023. RcppParallel: Parallel Programming Tools for “Rcpp”. https://CRAN.R-project.org/package=RcppParallel.
Allaire, JJ, Yihui Xie, Christophe Dervieux, Jonathan McPherson, Javier Luraschi, Kevin Ushey, Aron Atkins, et al. 2024. rmarkdown: Dynamic Documents for r. https://github.com/rstudio/rmarkdown.
Analytics, Revolution, and Steve Weston. 2022. iterators: Provides Iterator Construct. https://CRAN.R-project.org/package=iterators.
Antoine Lucas, Dirk Eddelbuettel with contributions by, Jarek Tuszynski, Henrik Bengtsson, Simon Urbanek, Mario Frasca, Bryan Lewis, Murray Stokely, et al. 2024. digest: Create Compact Hash Digests of r Objects. https://CRAN.R-project.org/package=digest.
Arel-Bundock, Vincent, Noah Greifer, and Andrew Heiss. Forthcoming. “How to Interpret Statistical Models Using
marginaleffects
in R
and Python
.” Journal of Statistical Software, Forthcoming. https://marginaleffects.com.
Auguie, Baptiste. 2017. gridExtra: Miscellaneous Functions for “Grid” Graphics. https://CRAN.R-project.org/package=gridExtra.
Barrett, Tyson, Matt Dowle, Arun Srinivasan, Jan Gorecki, Michael Chirico, and Toby Hocking. 2024. data.table: Extension of “data.frame”. https://CRAN.R-project.org/package=data.table.
Bates, Douglas, and Dirk Eddelbuettel. 2013. “Fast and Elegant Numerical Linear Algebra Using the RcppEigen Package.” Journal of Statistical Software 52 (5): 1–24. https://doi.org/10.18637/jss.v052.i05.
Bates, Douglas, Martin Mächler, Ben Bolker, and Steve Walker. 2015. “Fitting Linear Mixed-Effects Models Using lme4.” Journal of Statistical Software 67 (1): 1–48. https://doi.org/10.18637/jss.v067.i01.
Bates, Douglas, Katharine M. Mullen, John C. Nash, and Ravi Varadhan. 2024. minqa: Derivative-Free Optimization Algorithms by Quadratic Approximation. https://CRAN.R-project.org/package=minqa.
Beleites, C. 2020. arrayhelpers: Convenience Functions for Arrays. https://CRAN.R-project.org/package=arrayhelpers.
Bengtsson, Henrik. 2021. “A Unifying Framework for Parallel and Distributed Processing in r Using Futures.” The R Journal 13 (2): 208–27. https://doi.org/10.32614/RJ-2021-048.
———. 2024a. globals: Identify Global Objects in r Expressions. https://CRAN.R-project.org/package=globals.
———. 2024b. listenv: Environments Behaving (Almost) as Lists. https://CRAN.R-project.org/package=listenv.
———. 2024c. matrixStats: Functions That Apply to Rows and Columns of Matrices (and to Vectors). https://CRAN.R-project.org/package=matrixStats.
———. 2024d. parallelly: Enhancing the “parallel” Package. https://CRAN.R-project.org/package=parallelly.
Berwin A. Turlach R port by Andreas Weingessel <Andreas.Weingessel@ci.tuwien.ac.at> Fortran contributions from Cleve Moler dpodi/LINPACK), S original by. 2019. quadprog: Functions to Solve Quadratic Programming Problems. https://CRAN.R-project.org/package=quadprog.
Bürkner, Paul-Christian. 2017. “brms: An R Package for Bayesian Multilevel Models Using Stan.” Journal of Statistical Software 80 (1): 1–28. https://doi.org/10.18637/jss.v080.i01.
———. 2018. “Advanced Bayesian Multilevel Modeling with the R Package brms.” The R Journal 10 (1): 395–411. https://doi.org/10.32614/RJ-2018-017.
———. 2021. “Bayesian Item Response Modeling in R with brms and Stan.” Journal of Statistical Software 100 (5): 1–54. https://doi.org/10.18637/jss.v100.i05.
Bürkner, Paul-Christian, Jonah Gabry, Matthew Kay, and Aki Vehtari. 2023. “posterior: Tools for Working with Posterior Distributions.” https://mc-stan.org/posterior/.
Chang, Winston. 2021. R6: Encapsulated Classes with Reference Semantics. https://CRAN.R-project.org/package=R6.
———. 2024a. cachem: Cache r Objects with Automatic Pruning. https://CRAN.R-project.org/package=cachem.
———. 2024b. fastmap: Fast Data Structures. https://CRAN.R-project.org/package=fastmap.
Cheng, Joe, Timothy Mastny, Richard Iannone, Barret Schloerke, and Carson Sievert. 2024. sass: Syntactically Awesome Style Sheets (“Sass”). https://CRAN.R-project.org/package=sass.
Cheng, Joe, Carson Sievert, Barret Schloerke, Winston Chang, Yihui Xie, and Jeff Allen. 2024. htmltools: Tools for HTML. https://CRAN.R-project.org/package=htmltools.
Christensen, Rune H. B. 2023. Ordinal—Regression Models for Ordinal Data. https://CRAN.R-project.org/package=ordinal.
Csardi, Gabor. 2023. prettyunits: Pretty, Human Readable Formatting of Quantities. https://CRAN.R-project.org/package=prettyunits.
Csárdi, Gábor. 2019. pkgconfig: Private Configuration for “R” Packages. https://CRAN.R-project.org/package=pkgconfig.
———. 2024. crayon: Colored Terminal Output. https://CRAN.R-project.org/package=crayon.
Csárdi, Gábor, and Winston Chang. 2024a. callr: Call r from r. https://CRAN.R-project.org/package=callr.
———. 2024b. processx: Execute and Control System Processes. https://CRAN.R-project.org/package=processx.
Csárdi, Gábor, and Rich FitzJohn. 2023. progress: Terminal Progress Bars. https://CRAN.R-project.org/package=progress.
Csárdi, Gábor, Jim Hester, Hadley Wickham, Winston Chang, Martin Morgan, and Dan Tenenbaum. 2024. remotes: R Package Installation from Remote Repositories, Including “GitHub”. https://CRAN.R-project.org/package=remotes.
Csárdi, Gábor, Kirill Müller, and Jim Hester. 2023. desc: Manipulate DESCRIPTION Files. https://CRAN.R-project.org/package=desc.
Dahl, David B., David Scott, Charles Roosen, Arni Magnusson, and Jonathan Swinton. 2019. xtable: Export Tables to LaTeX or HTML. https://CRAN.R-project.org/package=xtable.
Eddelbuettel, Dirk. 2013. Seamless R and C++ Integration with Rcpp. New York: Springer. https://doi.org/10.1007/978-1-4614-6868-4.
Eddelbuettel, Dirk, and James Joseph Balamuta. 2018. “Extending R with C++: A Brief Introduction to Rcpp.” The American Statistician 72 (1): 28–36. https://doi.org/10.1080/00031305.2017.1375990.
Eddelbuettel, Dirk, John W. Emerson, and Michael J. Kane. 2024. BH: Boost c++ Header Files. https://CRAN.R-project.org/package=BH.
Eddelbuettel, Dirk, Romain Francois, JJ Allaire, Kevin Ushey, Qiang Kou, Nathan Russell, Inaki Ucar, Douglas Bates, and John Chambers. 2024. Rcpp: Seamless r and c++ Integration. https://CRAN.R-project.org/package=Rcpp.
Eddelbuettel, Dirk, and Romain François. 2011. “Rcpp: Seamless R and C++ Integration.” Journal of Statistical Software 40 (8): 1–18. https://doi.org/10.18637/jss.v040.i08.
Friedman, Jerome, Robert Tibshirani, and Trevor Hastie. 2010. “Regularization Paths for Generalized Linear Models via Coordinate Descent.” Journal of Statistical Software 33 (1): 1–22. https://doi.org/10.18637/jss.v033.i01.
Gabry, Jonah, Ben Goodrich, Martin Lysy, and Andrew Johnson. 2024. rstantools: Tools for Developing r Packages Interfacing with “Stan”. https://CRAN.R-project.org/package=rstantools.
Gabry, Jonah, and Tristan Mahr. 2024. “bayesplot: Plotting for Bayesian Models.” https://mc-stan.org/bayesplot/.
Gabry, Jonah, Daniel Simpson, Aki Vehtari, Michael Betancourt, and Andrew Gelman. 2019. “Visualization in Bayesian Workflow.” J. R. Stat. Soc. A 182: 389–402. https://doi.org/10.1111/rssa.12378.
Gagolewski, Marek. 2022. “stringi: Fast and Portable Character String Processing in R.” Journal of Statistical Software 103 (2): 1–59. https://doi.org/10.18637/jss.v103.i02.
Garbett, Shawn P, Jeremy Stephens, Kirill Simonov, Yihui Xie, Zhuoer Dong, Hadley Wickham, Jeffrey Horner, et al. 2023. yaml: Methods to Convert r Data to YAML and Back. https://CRAN.R-project.org/package=yaml.
Garnier, Simon, Ross, Noam, Rudis, Robert, Camargo, et al. 2023. viridis(Lite) - Colorblind-Friendly Color Maps for r. https://doi.org/10.5281/zenodo.4678327.
Gaslam, Brodie. 2023. fansi: ANSI Control Sequence Aware String Functions. https://CRAN.R-project.org/package=fansi.
Genz, Alan, and Frank Bretz. 2009. Computation of Multivariate Normal and t Probabilities. Lecture Notes in Statistics. Heidelberg: Springer-Verlag.
Gilbert, Paul, and Ravi Varadhan. 2019. numDeriv: Accurate Numerical Derivatives. https://CRAN.R-project.org/package=numDeriv.
Greifer, Noah. 2024. cobalt: Covariate Balance Tables and Plots. https://CRAN.R-project.org/package=cobalt.
Gronau, Quentin F., Henrik Singmann, and Eric-Jan Wagenmakers. 2020. “bridgesampling: An R Package for Estimating Normalizing Constants.” Journal of Statistical Software 92 (10): 1–29. https://doi.org/10.18637/jss.v092.i10.
Grosjean, Philippe. 2024. SciViews-r. MONS, Belgium: UMONS. https://www.sciviews.org/SciViews-R/.
Grund, Simon, Alexander Robitzsch, and Oliver Luedtke. 2023. mitml: Tools for Multiple Imputation in Multilevel Modeling. https://CRAN.R-project.org/package=mitml.
Hankin, R. K. S. 2007. “Very Large Numbers in r: Introducing Package Brobdingnag.” R News 7.
Hasselman, Berend. 2023. nleqslv: Solve Systems of Nonlinear Equations. https://CRAN.R-project.org/package=nleqslv.
Henry, Lionel, and Hadley Wickham. 2023. lifecycle: Manage the Life Cycle of Your Package Functions. https://CRAN.R-project.org/package=lifecycle.
———. 2024. tidyselect: Select from a Set of Strings. https://CRAN.R-project.org/package=tidyselect.
Hester, Jim, and Jennifer Bryan. 2024. glue: Interpreted String Literals. https://CRAN.R-project.org/package=glue.
Hester, Jim, Lionel Henry, Kirill Müller, Kevin Ushey, Hadley Wickham, and Winston Chang. 2024. withr: Run Code “With” Temporarily Modified Global State. https://CRAN.R-project.org/package=withr.
Hester, Jim, Hadley Wickham, and Jennifer Bryan. 2023. vroom: Read and Write Rectangular Text Data Quickly. https://CRAN.R-project.org/package=vroom.
Hester, Jim, Hadley Wickham, and Gábor Csárdi. 2024. fs: Cross-Platform File System Operations Based on “libuv”. https://CRAN.R-project.org/package=fs.
Huntington-Klein, Nick, and Malcolm Barrett. 2024. causaldata: Example Data Sets for Causal Inference Textbooks. https://CRAN.R-project.org/package=causaldata.
Iannone, Richard. 2023. fontawesome: Easily Work with “Font Awesome” Icons. https://CRAN.R-project.org/package=fontawesome.
Johnson, Andrew R. 2024. QuickJSR: Interface for the “QuickJS” Lightweight “JavaScript” Engine. https://CRAN.R-project.org/package=QuickJSR.
Johnson, Steven G. 2008. The NLopt Nonlinear-Optimization Package. https://github.com/stevengj/nlopt.
Justin Talbot. 2023. labeling: Axis Labeling. https://CRAN.R-project.org/package=labeling.
Kay, Matthew. 2023. tidybayes: Tidy Data and Geoms for Bayesian Models. https://doi.org/10.5281/zenodo.1308151.
———. 2024a. ggdist: Visualizations of Distributions and Uncertainty. https://doi.org/10.5281/zenodo.3879620.
———. 2024b. “ggdist: Visualizations of Distributions and Uncertainty in the Grammar of Graphics.” IEEE Transactions on Visualization and Computer Graphics 30 (1): 414–24. https://doi.org/10.1109/TVCG.2023.3327195.
Lang, Michel. 2017. “checkmate: Fast Argument Checks for Defensive R Programming.” The R Journal 9 (1): 437–45. https://doi.org/10.32614/RJ-2017-028.
Lang, Michel, Duncan Murdoch, and R Core Team. 2024. backports: Reimplementations of Functions Introduced Since r-3.0.0. https://CRAN.R-project.org/package=backports.
Lenth, Russell. 2024. estimability: Tools for Assessing Estimability of Linear Predictions. https://CRAN.R-project.org/package=estimability.
Lenth, Russell V. 2024. emmeans: Estimated Marginal Means, Aka Least-Squares Means. https://CRAN.R-project.org/package=emmeans.
Lincoln, Matthew. 2022. clipr: Read and Write from the System Clipboard. https://CRAN.R-project.org/package=clipr.
Loden, Jay, Dave Daeschler, Giampaolo Rodola’, and Gábor Csárdi. 2024. ps: List, Query, Manipulate System Processes. https://CRAN.R-project.org/package=ps.
Lüdecke, Daniel, Philip Waggoner, and Dominique Makowski. 2019. “insight: A Unified Interface to Access Information from Model Objects in R.” Journal of Open Source Software 4 (38): 1412. https://doi.org/10.21105/joss.01412.
Microsoft, and Steve Weston. 2022. foreach: Provides Foreach Looping Construct. https://CRAN.R-project.org/package=foreach.
Neuwirth, Erich. 2022. RColorBrewer: ColorBrewer Palettes. https://CRAN.R-project.org/package=RColorBrewer.
Nielsen, Hans Bruun, and Stig Bousgaard Mortensen. 2024. ucminf: General-Purpose Unconstrained Non-Linear Optimization. https://CRAN.R-project.org/package=ucminf.
O’Hara-Wild, Mitchell, Matthew Kay, and Alex Hayes. 2024. distributional: Vectorised Probability Distributions. https://CRAN.R-project.org/package=distributional.
Oehlschlägel, Jens. 2024a. bit: Classes and Methods for Fast Memory-Efficient Boolean Selections. https://CRAN.R-project.org/package=bit.
———. 2024b. Bit64: A S3 Class for Vectors of 64bit Integers. https://CRAN.R-project.org/package=bit64.
Pedersen, Thomas Lin. 2024. patchwork: The Composer of Plots. https://CRAN.R-project.org/package=patchwork.
Pedersen, Thomas Lin, Berendea Nicolae, and Romain François. 2024. farver: High Performance Colour Space Manipulation. https://CRAN.R-project.org/package=farver.
Perry, Patrick O. 2023. Utf8: Unicode Text Processing. https://CRAN.R-project.org/package=utf8.
Plate, Tony, and Richard Heiberger. 2016. abind: Combine Multidimensional Arrays. https://CRAN.R-project.org/package=abind.
Plummer, Martyn, Nicky Best, Kate Cowles, and Karen Vines. 2006. “CODA: Convergence Diagnosis and Output Analysis for MCMC.” R News 6 (1): 7–11. https://journal.r-project.org/archive/.
Quartagno, Matteo, and James Carpenter. 2023. jomo: A Package for Multilevel Joint Modelling Multiple Imputation. https://CRAN.R-project.org/package=jomo.
R Core Team. 2024. R: A Language and Environment for Statistical Computing. Vienna, Austria: R Foundation for Statistical Computing. https://www.R-project.org/.
Ratnakumar, Sridhar, Trent Mick, and Trevor Davis. 2021. rappdirs: Application Directories: Determine Where to Save Data, Caches, and Logs. https://CRAN.R-project.org/package=rappdirs.
Sievert, Carson, and Joe Cheng. 2021. jquerylib: Obtain “jQuery” as an HTML Dependency Object. https://CRAN.R-project.org/package=jquerylib.
Sievert, Carson, Joe Cheng, and Garrick Aden-Buie. 2024. bslib: Custom “Bootstrap” “Sass” Themes for “shiny” and “rmarkdown”. https://CRAN.R-project.org/package=bslib.
Simon, Noah, Jerome Friedman, Robert Tibshirani, and Trevor Hastie. 2011. “Regularization Paths for Cox’s Proportional Hazards Model via Coordinate Descent.” Journal of Statistical Software 39 (5): 1–13. https://doi.org/10.18637/jss.v039.i05.
Sklyar, Oleg, Duncan Murdoch, Mike Smith, Dirk Eddelbuettel, Romain Francois, Karline Soetaert, and Johannes Ranke. 2021. inline: Functions to Inline c, c++, Fortran Function Calls from r. https://CRAN.R-project.org/package=inline.
Soetaert, Karline. 2024. shape: Functions for Plotting Graphical Shapes, Colors. https://CRAN.R-project.org/package=shape.
Stan Development Team. 2020. “StanHeaders: Headers for the R Interface to Stan.” https://mc-stan.org/.
———. n.d. “RStan: The R Interface to Stan.” https://mc-stan.org/.
Stauffer, Reto, Georg J. Mayr, Markus Dabernig, and Achim Zeileis. 2009. “Somewhere over the Rainbow: How to Make Effective Use of Colors in Meteorological Visualizations.” Bulletin of the American Meteorological Society 96 (2): 203–16. https://doi.org/10.1175/BAMS-D-13-00155.1.
Tay, J. Kenneth, Balasubramanian Narasimhan, and Trevor Hastie. 2023. “Elastic Net Regularization Paths for All Generalized Linear Models.” Journal of Statistical Software 106 (1): 1–31. https://doi.org/10.18637/jss.v106.i01.
Thorley, Joe, Kirill Müller, and Ayla Pearson. 2024. chk: Check User-Supplied Function Arguments. https://CRAN.R-project.org/package=chk.
Urbanek, Simon. 2015. Base64enc: Tools for Base64 Encoding. https://CRAN.R-project.org/package=base64enc.
Ushey, Kevin, and Hadley Wickham. 2024. renv: Project Environments. https://CRAN.R-project.org/package=renv.
van Buuren, Stef, and Karin Groothuis-Oudshoorn. 2011. “mice: Multivariate Imputation by Chained Equations in r.” Journal of Statistical Software 45 (3): 1–67. https://doi.org/10.18637/jss.v045.i03.
van den Boogaart, K. Gerald. 2023. tensorA: Advanced Tensor Arithmetic with Named Indices. https://CRAN.R-project.org/package=tensorA.
Vaughan, Davis. 2023. tzdb: Time Zone Database Information. https://CRAN.R-project.org/package=tzdb.
Vaughan, Davis, Jim Hester, and Romain François. 2023. Cpp11: A c++11 Interface for r’s c Interface. https://CRAN.R-project.org/package=cpp11.
Vehtari, Aki, Jonah Gabry, Måns Magnusson, Yuling Yao, Paul-Christian Bürkner, Topi Paananen, and Andrew Gelman. 2024. “loo: Efficient Leave-One-Out Cross-Validation and WAIC for Bayesian Models.” https://mc-stan.org/loo/.
Vehtari, Aki, Andrew Gelman, and Jonah Gabry. 2017. “Practical Bayesian Model Evaluation Using Leave-One-Out Cross-Validation and WAIC.” Statistics and Computing 27: 1413–32. https://doi.org/10.1007/s11222-016-9696-4.
Vehtari, Aki, Andrew Gelman, Daniel Simpson, Bob Carpenter, and Paul-Christian Bürkner. 2021. “Rank-Normalization, Folding, and Localization: An Improved Rhat for Assessing Convergence of MCMC (with Discussion).” Bayesian Analysis.
Wickham, Charlotte. 2024. munsell: Utilities for Using Munsell Colours. https://CRAN.R-project.org/package=munsell.
Wickham, Hadley. 2007. “Reshaping Data with the reshape Package.” Journal of Statistical Software 21 (12): 1–20. http://www.jstatsoft.org/v21/i12/.
———. 2011. “The Split-Apply-Combine Strategy for Data Analysis.” Journal of Statistical Software 40 (1): 1–29. https://www.jstatsoft.org/v40/i01/.
Wickham, Hadley, Mara Averick, Jennifer Bryan, Winston Chang, Lucy D’Agostino McGowan, Romain François, Garrett Grolemund, et al. 2019. “Welcome to the tidyverse.” Journal of Open Source Software 4 (43): 1686. https://doi.org/10.21105/joss.01686.
Wickham, Hadley, Lionel Henry, and Davis Vaughan. 2023. vctrs: Vector Helpers. https://CRAN.R-project.org/package=vctrs.
Wickham, Hadley, Jim Hester, Winston Chang, Kirill Müller, and Daniel Cook. 2021. memoise: “Memoisation” of Functions. https://CRAN.R-project.org/package=memoise.
Wickham, Hadley, Jim Hester, and Gábor Csárdi. 2024. pkgbuild: Find Tools Needed to Build r Packages. https://CRAN.R-project.org/package=pkgbuild.
Wickham, Hadley, Max Kuhn, and Davis Vaughan. 2022. generics: Common S3 Generics Not Provided by Base r Methods Related to Model Fitting. https://CRAN.R-project.org/package=generics.
Wickham, Hadley, and Thomas Lin Pedersen. 2024. gtable: Arrange “Grobs” in Tables. https://CRAN.R-project.org/package=gtable.
Wickham, Hadley, Thomas Lin Pedersen, and Dana Seidel. 2023. scales: Scale Functions for Visualization. https://CRAN.R-project.org/package=scales.
Wickham, Hadley, Claus O. Wilke, and Thomas Lin Pedersen. 2022. isoband: Generate Isolines and Isobands from Regularly Spaced Elevation Grids. https://CRAN.R-project.org/package=isoband.
Wickham, Hadley, and Yihui Xie. 2024. evaluate: Parsing and Evaluation Tools That Provide More Details Than the Default. https://CRAN.R-project.org/package=evaluate.
Wilke, Claus O. 2024. ggridges: Ridgeline Plots in “ggplot2”. https://CRAN.R-project.org/package=ggridges.
Xie, Yihui. 2014. “knitr: A Comprehensive Tool for Reproducible Research in R.” In Implementing Reproducible Computational Research, edited by Victoria Stodden, Friedrich Leisch, and Roger D. Peng. Chapman; Hall/CRC.
———. 2015. Dynamic Documents with R and Knitr. 2nd ed. Boca Raton, Florida: Chapman; Hall/CRC. https://yihui.org/knitr/.
———. 2016. bookdown: Authoring Books and Technical Documents with R Markdown. Boca Raton, Florida: Chapman; Hall/CRC. https://bookdown.org/yihui/bookdown.
———. 2019. “TinyTeX: A Lightweight, Cross-Platform, and Easy-to-Maintain LaTeX Distribution Based on TeX Live.” TUGboat 40 (1): 30–32. https://tug.org/TUGboat/Contents/contents40-1.html.
———. 2021. mime: Map Filenames to MIME Types. https://CRAN.R-project.org/package=mime.
———. 2024a. bookdown: Authoring Books and Technical Documents with r Markdown. https://github.com/rstudio/bookdown.
———. 2024b. knitr: A General-Purpose Package for Dynamic Report Generation in r. https://yihui.org/knitr/.
———. 2024c. tinytex: Helper Functions to Install and Maintain TeX Live, and Compile LaTeX Documents. https://github.com/rstudio/tinytex.
———. 2024d. xfun: Supporting Functions for Packages Maintained by “Yihui Xie”. https://CRAN.R-project.org/package=xfun.
Xie, Yihui, J. J. Allaire, and Garrett Grolemund. 2018. R Markdown: The Definitive Guide. Boca Raton, Florida: Chapman; Hall/CRC. https://bookdown.org/yihui/rmarkdown.
Xie, Yihui, Christophe Dervieux, and Emily Riederer. 2020. R Markdown Cookbook. Boca Raton, Florida: Chapman; Hall/CRC. https://bookdown.org/yihui/rmarkdown-cookbook.
Xie, Yihui, and Yixuan Qiu. 2024. highr: Syntax Highlighting for r Source Code. https://CRAN.R-project.org/package=highr.
Yao, Yuling, Aki Vehtari, Daniel Simpson, and Andrew Gelman. 2017. “Using Stacking to Average Bayesian Predictive Distributions.” Bayesian Analysis. https://doi.org/10.1214/17-BA1091.
Zeileis, Achim. 2004. “Econometric Computing with HC and HAC Covariance Matrix Estimators.” Journal of Statistical Software 11 (10): 1–17. https://doi.org/10.18637/jss.v011.i10.
———. 2006. “Object-Oriented Computation of Sandwich Estimators.” Journal of Statistical Software 16 (9): 1–16. https://doi.org/10.18637/jss.v016.i09.
Zeileis, Achim, Jason C. Fisher, Kurt Hornik, Ross Ihaka, Claire D. McWhite, Paul Murrell, Reto Stauffer, and Claus O. Wilke. 2020. “colorspace: A Toolbox for Manipulating and Assessing Colors and Palettes.” Journal of Statistical Software 96 (1): 1–49. https://doi.org/10.18637/jss.v096.i01.
Zeileis, Achim, and Gabor Grothendieck. 2005. “zoo: S3 Infrastructure for Regular and Irregular Time Series.” Journal of Statistical Software 14 (6): 1–27. https://doi.org/10.18637/jss.v014.i06.
Zeileis, Achim, Kurt Hornik, and Paul Murrell. 2009. “Escaping RGBland: Selecting Colors for Statistical Graphics.” Computational Statistics & Data Analysis 53 (9): 3259–70. https://doi.org/10.1016/j.csda.2008.11.033.
Zeileis, Achim, Susanne Köll, and Nathaniel Graham. 2020. “Various Versatile Variances: An Object-Oriented Implementation of Clustered Covariances in R.” Journal of Statistical Software 95 (1): 1–36. https://doi.org/10.18637/jss.v095.i01.
Zhao, Jing Hua, and Joseph L. Schafer. 2023. pan: Multiple Imputation for Multivariate Panel or Clustered Data.